PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00005.110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 473aa    MW: 52517.6 Da    PI: 4.5798
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00005.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-341412322102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e++ed+e+++++sws+n +sf+v+d +e++k++LpkyFkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F+ gkk+ll++
  Jcr4S00005.110 141 FLRKTFEMVEDPETDSTVSWSKNRDSFIVWDAHELSKHLLPKYFKHCNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFQGGKKHLLKN 226
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+++
  Jcr4S00005.110 227 IRRRSR 232
                     ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.71E-34137230IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-57137230IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.8E-37137230IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-30141230IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-18141164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-18179191IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340180204IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-18192204IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MLAPDFESCG DGCGGGGGGG GGGLSPSLSA TFMPKPTQPE EEEPLQSISV KEEEMPVAGS  60
GGSDGGPSSS ASSSLMTTEI ERKAETIKVV TIKEEAGEEY DAGAIGDVDN GVNNNGSSSS  120
SSSVDLPKPM EGLHETGPPP FLRKTFEMVE DPETDSTVSW SKNRDSFIVW DAHELSKHLL  180
PKYFKHCNFS SFIRQLNTYG FRKVDPDRWE FANEGFQGGK KHLLKNIRRR SRYNKQQQGA  240
VTSDDSAKLS LEVQLEKLKN DQDLLKVEIF KLRQQQENSE NQLSTVEQRV RVAECKQLQM  300
FVFLAKAAKK GSFIQNLIQK RKRQRELDAA EFGKKRRLLD SQVRARLLDA VDANQSVICR  360
NQAQEQLATM QTELTEILKE DTETNTMSKL FETPISDEFC SPAIATCGTN TQESVYHLMS  420
EILLDDDTVP EVLVDEDLDV NDSKFYLELE DLTGKPRSWD GYVTELVQQA GCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-231162304129Heat shock factor protein 1
5d5v_B7e-231162304129Heat shock factor protein 1
5d5v_D7e-231162304129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324KRKRQR
2320336RKRQRELDAAEFGKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076960.10.0PREDICTED: heat stress transcription factor A-2-like
TrEMBLA0A067KPW60.0A0A067KPW6_JATCU; Uncharacterized protein
STRINGPOPTR_0006s15050.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-85heat shock transcription factor A2